References For Validation Workshop (May 10 2006) Developmental Validation

references for validation workshop (may 10, 2006) developmental validation papers =============================== collins pj, henness

References for Validation Workshop (May 10, 2006)
Developmental Validation Papers
===============================
Collins PJ, Hennessy LK, Leibelt CS, Roby RK, Reeder DJ, Foxall PA.
Developmental validation of a single-tube amplification of the 13
CODIS STR loci, D2S1338, D19S433, and amelogenin: the AmpFlSTR
Identifiler PCR amplification kit. J. Forensic Sci. 2004; 49(6):
1265-1277.
Cotton EA, Allsop RF, Guest JL, Frazier RR, Koumi P, Callow IP, Seager
A, Sparkes RL. Validation of the AMPFlSTR SGM Plus system for use in
forensic casework. Forensic Sci Int 2000; 112: 151-161.
Daniels DL, Hall AM, Ballantyne J. SWGDAM developmental validation of
a 19-locus Y-STR system for forensic casework. J Forensic Sci 2004;
49(4):668-683.
Fregeau CJ, Bowen KL, Fourney RM. Validation of highly polymorphic
fluorescent multiplex short tandem repeat systems using two
generations of DNA sequencers. J Forensic Sci 1999; 44(1):133-166. [ABI
377]
Green RL, Roinestad IC, Boland C, Hennessy LK. Developmental
validation of the Quantifiler real-time PCR kits for the
quantification of human nuclear DNA samples. J. Forensic Sci. 2005;
50(4): 809-825.
Greenspoon SA, Ban JD, Sykes K, Ballard EJ, Edler SS, Baisden M,
Covington BL. Application of the BioMek 2000 Laboratory Automation
Workstation and the DNA IQ System to the extraction of forensic
casework samples. J Forensic Sci 2004; 49(1):29-39.
Greenspoon SA, Ban JD, Pablo L, Crouse CA, Kist FG, Tomsey CS,
Glessner AL, Mihalacki LR, Long TM, Heidebrecht BJ, Braunstein CA,
Freeman DA, Soberalski C, Nathan B, Amin AS, Douglas EK, Schumm JW.
Validation and implementation of the PowerPlex 16 BIO System STR
multiplex for forensic casework. J Forensic Sci 2004; 49(1):71-80.
Holt CL, Buoncristiani M, Wallin JM, Nguyen T, Lazaruk KD, Walsh PS.
TWGDAM validation of AmpFlSTR PCR amplification kits for forensic DNA
casework. J Forensic Sci 2002; 47(1): 66-96.
Kadash K, Kozlowski BE, Biega LA, Duceman BW. Validation study of the
TrueAllele automated data review system. J Forensic Sci 2004;
49(4):660-667.
Koumi P, Green HE, Hartley S, Jordan D, Lahec S, Livett RJ, Tsang KW,
Ward DM. Evaluation and validation of the ABI 3700, ABI 3100, and the
MegaBACE 1000 capillary array electrophoresis instruments for use with
short tandem repeat microsatellite typing in a forensic environment.
Electrophoresis 2004; 25(14):2227-2241.
Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, Tomsey
CS, Zachetti JM, Masibay A, Rabbach DR, Amiott EA, Sprecher CJ.
Validation of a 16-locus fluorescent multiplex system. J Forensic Sci
2002; 47(4): 773-785. [PowerPlex 16]
Krenke BE, Viculis L, Richard ML, Prinz M, Milne SC, Ladd C, Gross AM,
Gornall T, Frappier JRH, Eisenberg AJ, Barna C, Aranda XG, Adamowicz,
Budowle B. Validation of a male-specific, 12-locus fluorescent short
tandem repeat (STR) multiplex. Forensic Sci Int 2005; 148: 1-14. [PowerPlex
Y kit]
Lazaruk K, Walsh PS, Oaks F, Gilbert D, Rosenblum BB, Menchen S,
Scheibler D, Wenz HM, Holt C, Wallin J. Genotyping of forensic short
tandem repeat (STR) systems based on sizing precision in a capillary
electrophoresis instrument. Electrophoresis 1998;19(1):86-93. [ABI 310]
Levedakou EN, Freeman DA, Budzynski MJ, Early BE, Damaso RC, Pollard
AM, Townley AJ, Gombos JL, Lewis JL, Kist FG, Hockensmith ME,
Terwilliger ML, Amiott E, McElfresh KC, Schumm JW, Ulery SR, Konotop
F, Sessa TL, Sailus JS, Crouse CA, Tomsey CS, Ban JD, Nelson MS.
Characterization and validation studies of PowerPlex 2.1, a nine-locus
short tandem repeat (STR) multiplex system and penta D monoplex. J
Forensic Sci 2002; 47(4):757-772.
Micka KA, Amiott EA, Hockenberry TL, Sprecher CJ, Lins AM, Rabbach DR,
Taylor JA, Bacher JW, Glidewell DE, Gibson SD, Crouse CA, Schumm JW.
TWGDAM validation of a nine-locus and a four-locus fluorescent STR
multiplex system. J Forensic Sci 1999; 44(6):1243-1257. [PowerPlex 1.1
and FFFL]
Mulero, J. J., Chang, C. W., Calandro, L. M., Green, R. L., Li, Y.,
Johnson, C. L., and Hennessy, L. K. (2006) Development and Validation
of the AmpFlSTR Yfiler PCR Amplification Kit: A Male Specific, Single
Amplification 17 Y-STR Multiplex System. J Forensic Sci. 51(1): 64-75.
Nicklas JA, Buel E. Development of an Alu-based, real-time PCR method
for quantitation of human DNA in forensic samples. J Forensic Sci
2003;48(5):936-944.
Richard ML, Frappier RH, Newman JC. Developmental validation of a
real-time quantitative PCR assay for automated quantification of human
DNA. J Forensic Sci 2003; 48(5):1041-1046. [CFS qPCR assay]
Wallin JM, Buoncristiani MR, Lazaruk KD, Fildes N, Holt CL, Walsh PS.
TWGDAM validation of the AmpFISTR Blue PCR amplification kit for
forensic casework analysis. J Forensic Sci 1998; 43(4):854-870.
Wilson MR, DiZinno JA, Polanskey D, Replogle J, Budowle B. Validation
of mitochondrial DNA sequencing for forensic casework analysis. Int J
Legal Med 1995; 108(2):68-74.
Internal Validation Papers
==========================
Buse EL, Putinier JC, Hong MM, Yap AE, Hartmann JM. Performance
evaluation of two multiplexes used in fluorescent short tandem repeat
DNA analysis. J Forensic Sci 2003; 48(2):348-357. [Profiler
Plus/COfiler]
Fox JC, Cave CA, Schumm JW. Development, characterization, and
validation of a sensitive primate-specific quantification assay for
forensic analysis. Biotechniques 2003; 34(2):314-322. [Bode
quantitation assay]
Frank WE, Llewellyn BE, Fish PA, Riech AK, Marcacci TL, Gandor DW,
Parker D, Carter RR, Thibault SM. Validation of the AmpFlSTR Profiler
Plus PCR amplification kit for use in forensic casework. J Forensic
Sci 2001; 46(3):642-646.
Fregeau CJ, Bowen KL, Leclair B, Trudel I, Bishop L, Fourney RM.
AmpFlSTR Profiler Plus short tandem repeat DNA analysis of casework
samples, mixture samples, and nonhuman DNA samples amplified under
reduced PCR volume conditions (25 microL). J Forensic Sci 2003;
48(5):1014-1034.
Gaines ML, Wojtkiewicz PW, Valentine JA, Brown CL. Reduced volume PCR
amplification reactions using the AmpFlSTR Profiler Plus kit. J
Forensic Sci 2002; 47(6):1224-1237.
Gill P, Koumi P, Allen H. Sizing short tandem repeat alleles in
capillary array gel electrophoresis instruments. Electrophoresis
2001;22:2670-2678. [ABI 3700]
Greenspoon SA, Lytle PJ, Turek SA, Rolands JM, Scarpetta MA, Carr CD.
Validation of the PowerPlex 1.1 loci for use in human identification.
J Forensic Sci 2000; 45(3):677-683.
Holland MM, Parsons TJ. Mitochondrial DNA sequence analysis -
validation and use for forensic casework. Forensic Sci Rev 1999;
11(1):22-50.
Isenberg AR, Allen RO, Keys KM, Smerick JB, Budowle B, McCord BR.
Analysis of two multiplexed short tandem repeat systems using
capillary electrophoresis with multiwavelength florescence detection.
Electrophoresis 1998;19:94-100.
Johnson CL, Warren JH, Giles RC, Staub RW. Validation and uses of a
Y-chromosome STR 10-plex for forensic and paternity laboratories. J
Forensic Sci 2003; 48(6):1260-1268.
Kimpton CP, Fisher D, Watson S, Adams M, Urquhart A, Lygo J, Gill P.
Evaluation of an automated DNA profiling system employing multiplex
amplification of four tetrameric STR loci. Int J Leg Med 1994;
106:302-311.
Kimpton CP, Oldroyd NJ, Watson SK, Frazier RR, Johnson PE, Millican
ES, Urquhart A, Sparkes BL, Gill P. Validation of highly
discriminating multiplex short tandem repeat amplification systems for
individual identification. Electrophoresis 1996; 17(8):1283-1293.
Kline MC, Duewer DL, Newall P, Redman JW, Reeder DJ, Richard M.
Interlaboratory evaluation of short tandem repeat triplex CTT*. J
Forensic Sci 1997; 42(5):897-906.
LaFountain MJ, Schwartz MB, Svete PA, Walkinshaw MA, Buel E. TWGDAM
validation of the AmpFlSTR Profiler Plus and AmpFlSTR COfiler STR
multiplex systems using capillary electrophoresis. J Forensic Sci
2001; 46(5):1191-1198.
LaFountain M, Schwartz M, Cormier J, Buel E. Validation of capillary
electrophoresis for analysis of the X-Y homologous amelogenin gene. J
Forensic Sci 1998; 43(6):1188-1194.
Leibelt C, Budowle B, Collins P, Daoudi Y, Moretti T, Nunn G, Reeder
D, Roby R. Identification of a D8S1179 primer binding site mutation
and the validation of a primer designed to recover null alleles.
Forensic Sci Int 2003; 133(3):220-227.
Lygo JE, Johnson PE, Holdaway DJ, Woodroffe S, Whitaker JP, Clayton
TM, Kimpton CP, Gill P. The validation of short tandem repeat (STR)
loci for use in forensic casework. Int J Legal Med 1994; 107(2):77-89.
Mandrekar MN, Erickson AM, Kopp K, Krenke BE, Mandrekar PV, Nelson R,
Peterson K, Shultz J, Tereba A, Westphal N. Development of a human DNA
quantitation system. Croat Med J 2001; 42(3):336-339. [AluQuant]
Micka KA, Sprecher CJ, Lins AM, Comey CT, Koons BW, Crouse C, Endean
D, Pirelli K, Lee SB, Duda N, Ma M, Schumm JW. Validation of multiplex
polymorphic STR amplification sets developed for personal
identification applications. J Forensic Sci 1996; 41(4):582-590.
Moretti TR, Baumstark AL, Defenbaugh DA, Keys KM, Brown AL, Budowle B.
Validation of STR typing by capillary electrophoresis. J Forensic Sci
2001; 46(3):661-676.
Moretti TR, Baumstark AL, Defenbaugh DA, Keys KM, Smerick JB, Budowle
B. Validation of short tandem repeats (STRs) for forensic usage:
performance testing of fluorescent multiplex STR systems and analysis
of authentic and simulated forensic samples. J Forensic Sci 2001;
46(3):647-660.
Morley JM, Bark JE, Evans CE, Perry JG, Hewitt CA, Tully G. Validation
of mitochondrial DNA minisequencing for forensic casework. Int J Legal
Med 1999; 112(4):241-248.
Mozer TJ. Requirements for complete validation of an STR product.
Profiles in DNA 2001; 4(3):14-15.
Nelson MS, Levedakou EN, Matthews JR, Early BE, Freeman DA, Kuhn CA,
Sprecher CJ, Amin AS, McElfresh KC, Schumm JW. Detection of a
primer-binding site polymorphism for the STR locus D16S539 using the
Powerplex 1.1 system and validation of a degenerate primer to correct
for the polymorphism. J Forensic Sci 2002; 47(2):345-349.
Pawlowski R, Maciejewska A. Forensic validation of a multiplex
containing nine STRs--population genetics in northern Poland. Int J
Legal Med 2000; 114(1-2):45-49.
Pestoni C, Lareu MV, Rodriguez MS, Munoz I, Barros F, Carracedo A. The
use of the STRs HUMTH01, HUMVWA31/A, HUMF13A1, HUMFES/FPS, HUMLPL in
forensic application: validation studies and population data for
Galicia (NW Spain). Int J Legal Med 1995; 107(6):283-290.
Potter T. Co-amplification of ENFSI-loci D3S1358, D8S1179 and D18S51:
validation of new primer sequences and allelic distribution among 2874
individuals. Forensic Sci Int 2003; 138(1-3):104-110.
Prinz M, Ishii A, Coleman A, Baum HJ, Shaler RC. Validation and
casework application of a Y chromosome specific STR multiplex.
Forensic Sci Int 2001; 120(3):177-188.
Promega Corporation (2001) Validation of STR Systems Reference Manual.
http://www.promega.com/techserv/apps/hmnid/referenceinformation/powerplex/ValidationManual.pdf
Ryan JH, Barrus JK, Budowle B, Shannon CM, Thompson VW, Ward BE. The
application of an automated allele concordance analysis system (CompareCalls)
to ensure the accuracy of single-source STR DNA profiles. J Forensic
Sci 2004; 49(3):492-499.
Sgueglia JB, Geiger S, Davis J. Precision studies using the ABI Prism
3100 genetic analyzer for forensic DNA analysis. Anal Bioanal Chem
2003; 376(8):1247-1254.
Shewale JG, Nasir H, Schneida E, Gross AM, Budowle B, Sinha SK.
Y-chromosome STR system, Y-PLEX 12, for forensic casework: development
and validation. J Forensic Sci. 2004; 49(6): 1278-1290.
Sinha SK, Budowle B, Arcot SS, Richey SL, Chakrabor R, Jones MD,
Wojtkiewicz PW, Schoenbauer DA, Gross AM, Sinha SK, Shewale JG.
Development and validation of a multiplexed Y-chromosome STR
genotyping system, Y-PLEX 6, for forensic casework. J Forensic Sci
2003; 48(1):93-103.
Sinha SK, Nasir H, Gross AM, Budowle B, Shewale JG. Development and
validation of the Y-PLEX 5, a Y-chromosome STR genotyping system, for
forensic casework. J Forensic Sci 2003; 48(5):985-1000.
Sparkes R, Kimpton CP, Watson S, Oldroyd NJ, Clayton TM, Barnett L,
Arnold J, Thompson C, Hale R, Chapman J, Urquhart A, Gill P. The
validation of a 7-locus multiplex STR test for use in forensic
casework. (I). Mixtures, ageing, degradation and species studies. Int
J Legal Med 1996; 109(4):186-194. [FSS SGM assay]
Sparkes R, Kimpton C, Gilbard S, Carne P, Andersen J, Oldroyd N,
Thomas D, Urquhart A, Gill P. The validation of a 7-locus multiplex
STR test for use in forensic casework. (II), Artefacts, casework
studies and success rates. Int J Legal Med 1996; 109(4):195-204. [FSS
SGM assay]
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