D R Farakh Javed Assistant Professor Biomedical Sciences PAKAustria

d r. farakh javed assistant professor biomedical sciences pak-austria fachhochschule: institute of applied sciences & technolo

D

r. Farakh Javed
Assistant professor
Biomedical Sciences
PAK-Austria Fachhochschule: Institute of Applied Sciences & Technology
Mang, Haripur, Khyber Pakhtunkhwa
[email protected], [email protected]
Contact # 0092-335-1144333
https://www.researchgate.net/profile/Farakh_Javed

Personal Information
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Name: Farakh Javed
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S/O: Javed Iqbal Sheikh
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DOB: 27th September 1981
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CNIC NO: 13302-0999846-5
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Nationality: Pakistani
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D
Career Objectives
omicile: Haripur, KP
Education
I am Molecular Virologist and working as Assistant Professor in the
Department of Biomedical Sciences, Pak-Austria Fachhochshule: Institue
of Applied Sciences & Technology, Mang, Haripur, Khyber Pakhtunkhwa.
My area of expertise is routine and advanced techniques in Molecular
Pathology, Molecular Biology, Microbiology, Diagnostic and Cell
culture.
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Qualification
Institution
From
To
Score
%age
PhD
(Virology and Immunology)
Atta ur Rehman School of Applied Biosciences (ASAB), National
University of Sciences and Technology (NUST), Islamabad
Oct 2009
Feb, 2016
3.92/4.00
3.92
MPhil
(Biotechnology)
Quaid-i-Azam University, Islamabad
Mar 2007
Mar 2009
685/900
76.1%
BS (Honors)
(Biotechnology)
Center of Biotechnology, University of Peshawar
Jan 2002
Jan 2006
2876/4225
68%
FSc
(Pre-Medical)
BISE Abbottabad
June 1999
June 2001
675/1100
61.3%
SSC
(Science)
BISE Abbottabad
Mar 1996
Mar 1998
554/850
65.1%
Research Projects
1.
N
Professional Training
RPU grant (National Research Program for Universities), 2018-2020
(1.8M Pak-Rupees) Title: Molecular screening and the development
of diagnostic kit against Hepatitis delta virus circulating in
Pakistani population.
1: Teaching Experience:
*
March 2020 to date working as Assistant professor in the
Department of Biomedical Sciences, PAF-IAST, Mang, Haripur, Khyber
Pakhtunkhwa.
*
September, 2013 to March 2020, worked as Assistant Professor in
department of Microbiology & department of Medical Lab Technology,
The University of Haripur, Khyber Pakhtunkhwa. Have teaching
experience in different subjects i.e. Molecular Pathology, General
Virology, Medical Virology, General Immunology, Bioinformatics,
Computational Biology, Genetic Engineering, Molecular Biology,
Bioethics, General Microbiology and Human Anatomy and Physiology.
2: Research Experience:
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Seven months research work and training as International Scholar
in the department of infectious diseases, University of
California, San Diego USA from Sept. 2012 to Mar. 2013 and learnt
preparations of recombinant DNA molecules, Mammalian cell
cultures, Florescence Microscopy, Confocal microscopy, Flow
Cytometry, Oxidative phosphorylation assays and Western blotting
technique.
*
Research Officer at ASAB-NUST (Oct. 2008-to Oct.2011).
PAK/US research project among Rockefeller University, US and National
University of Sciences and Technology (NUST), Pakistan. Project title:
“Hepatitis C virus Management in Pakistan”
3: Research Supervision Experience:
*
2 PhD Scholars and 8 M.phil scholars are under Supervision at
Department of Microbiology, The University of Haripur.
*
Have successfully supervised 03 M.phil, 06 MSC and 12 BS research
scholars at Department of Microbiology and Department of Medical
Lab Technology, The University of Haripur, KP.
Laboratory Experience
Lab diagnostics techniques, Polymerase Chain Reaction (PCR) and it’s
variants, Microbiological techniques: different staining procedures,
spreading, streaking, fermentation; gel electrophoresis, Genomic and
viral DNA/RNA isolation, cloning, Plasmid DNA isolation, Restriction
digestion analysis of constructs, Transformation (bacteria & yeast),
Real Time-PCR, Data Analysis, SDS-PAGE, Western Blot, Thin layer
chromatography (TLC), Spectrophotometry, Maintenance of mammalian cell
lines and cultures, Transfection of mammalian expression vectors to
cell lines (Lipofectamin & Ca2+ phosphate mediated), Recombinant DNA
preparations, Florescence microscopy, Confocal Microscopy, Flow
cytometry etc.
*
A
Professional Memberships
merican Society for Microbiology (ASM)
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World Society for Virology
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Pakistan Biological Safety Association (PBSA)
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Pakistan Society for Microbiology (PSM)
MPhil Research Thesis Topic
S
PhD Research Thesis Topic
tudies on the biotreatment of Trinitrotoluene containing effluents by
native microbes (Bacteria) using various techniques.
Evaluation of the cellular and molecular effects of HCV non-structural
proteins on mitochondrial mediated apoptotic pathway.
Conferences, Workshops & Seminars (Organized)
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Hands on training workshop on “Microbiological Identification” on
account of 12th Biennial Conference of Pakistan Society for
Microbiology, February 19, 2019 at Department of Microbiology, The
University of Haripur, KP
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1st International workshop on “Nano Sciences & Technology”,
October 30-31, 2018 at The University of Haripur, KP
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Two day hands on training workshop on “Exploring Bacteriophage for
phage Therapy” on May 04-05, 2017 at Department of Microbiology
with collaboration of University of Punjab Lahore
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One day workshop on “Bioassays for discovery and safety analysis
of bioactive compounds”, April 10, 2017 at The University of
Haripur with collaboration of University of Agriculture Faisalabad
*
One day Seminar on “Nanoscience and Nanotechnology” on March 07
2017 at Department of Microbiology, The University of Harupr, KP
*
One day seminar on “Pink Ribbon Youth Awareness Drive” in
December, 2016 at Department of Microbiology, The University of
Haripur, KP
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Conference on “Sustainable Crop and Animal Production Systems” on
December 08-10, 2016, organized by Pakistan Agricultural
Scientists Forum at The University of Haripur, KP
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Ist Annual “HCV Management Symposium” on February 10-11, 2011 at
ASAB, National University of Sciences and Technology (NUST),
Islamabad
Conferences, Workshops & Seminars (Presentation)
*
Delivered a lecture on Hands on training workshop on
“Microbiological Identification” on account of 12th Biennial
Conference of Pakistan Society for Microbiology, February 19, 2019
at Department of Microbiology, The University of Haripur, KP
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Oral presenter at 5th International Water Conference- 2019
“Sustainable Water Resources Management” January 15-17, 2019 at
The Univeristy of Haripur, KP
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Delivered a lecture on “AIDs awareness” in one day seminar on
account of World AIDs Day on December 01, 2016 at The University
of Haripur, KP
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Oral Presenter at “1st International Conference on Virology” April
04, 2016 at Imperial College of Business Studies (ICBS), Lahore,
Pakistan
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Delivered a lecture on One day seminar “Hepatitis: Current
Challenges and Future prospects” on November 30, 2015 at
Department of Microbiology, The University of Haripur, KP
*
Oral presentation at 3rd International conference on “Emerging
trends in Bioinformatics and Biosciences” (ICETBB), 03 October
2015 at Muhammad Ali Jinnah University (MAJU), Islamabad, Pakistan
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Oral presentation at 4th International Molecular and Biology and
Biotechnology Congress and Conference on life Sciences research,
March, 2015 at Al-Nafees Medical College, Isra University
Islamabad Campus, Islamabad, Pakistan.
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Oral presentation at 10th Biennial International Conference of
Pakistan Society of Microbiology. January 28-31, 2015, Department
of Microbiology and Molecular Genetics, Quaid-e-Azam Campus,
University of the Punjab.
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Oral presentation at 12th International Conference Pakistan
Society of Biochemistry and Molecular Biology (PSBMB). December
4-7, 2014, University of Bahawalpur, Pakistan.
Conferences, Workshops & Seminars (Participation)
*
One day Technical Seminar and Workshop on “Stratigies to Develop
Chemical and Biological Safety Cultures in Laboratories” on March
13, 2018 at The University of Haripur, KP
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One day seminar on “International Day of Peace Makers” on May 18,
2017 at The University of Haripur, KP
*
One day training workshop on “Citation Management Using EndNote”
on April 06, 2017 at The University of Haripur, KP
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One day “Awareness Seminar on TB” on March 22, 2017 at The
University of Haripur, KP
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One day seminar on “Cancer: Recent Threats and Modern Research” on
February 16, 2017 at The University of Haripur, KP
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Two day National Workshop on “Bioinformatics and Computational
Drug Designing” on January 27-28, 2017 at Department of
Biochemistry, Kinnaird College for Women, Lahore
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One day Workshop on “Intellectual property Rights” December 20,
2016 at IPO, Pakistan and ORIC, The University of Haripur, KP
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One day Workshop on “Microbiological Quality Control Measures in
Industries” on November 8, 2016 at The University of Haripur, KP
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Participation at AFBMTC 3rd International Conference on Hematology
and Stem Cell Transplantation on November 19-20, 2016 at Serina
Hotel, Islamabad
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One day Seminar on “Cancer Awareness” on May 05, 2016 at The
University of Haripur, KP
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Participation in “Clinical Laboratory Professional Week” on April
25-28, 2016 at The University of Haripur, KP
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Participation in one day seminar on account of “World TB Day”,
March 30, 2016 at The University of Haripur, KP
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Five Days Course on “Biorisk Management” on March 07-11, 2016 at
The University of Haripur, KP
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Participated in training sessions on Automation in Diagnostics,
Molecular Diagnostics, Quality Assurance and Hospital Management
Information System at 2nd International Workshop on “Advanced
Diagnostic Techniques” on February 26-29, 2016 at Nuclar Medicine
Oncology & Radiotherapy (NORI), Pakistan Atomic Energy Commission,
Islamabad
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One day “First Aid & Fire Safety Training” on January 07, 2016 at
Department of Microbiology, University of Haripur, KP
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XIth Annual Conference of the “Asian Association of Transfusion
Medicine” on October 09, 2015 at Serina Hotel, Islamabad
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One month course on “Professional Competency Enhancement Program
for Teachers” on December 17, 2013 to January 21, 2014 organized
by Higher Education Commission (HEC) at The Univeristy of Haripur,
KP
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One Day “Workshop TB” on December 19, 2013 at Shaukat Khanum
Memorial Cancer Hospital and Research Center, Lahore
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One day international symposium on “Hepatitis B Virus”, April
02-04, 2013 at ASAB National University of Sciences and Technology
(NUST), Islamabad
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9th National Training Course on Modern Techniques in
Biotechnology, March 7-11, 2011 at National Institute of
Biotechnology and Genetic Engineering (NIBGE), Faisalabad.
Research Publications
18 International Publications in ISI indexed journals, impact factor
of 35, citations 256, h-index 9 and more than 30 Gene bank
submissions:
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Encapsulated virgin coconut oil as a nanoscale in vitro solution
against multiple drug resistant Staphylococcus aureus. A. Talib,
K.N. Manzoor, A. Ijaz, F. Adnan, F. Javed, A.A.Khan. Micro & Nano
letters. 2021; 16:9-15. https://doi.org/10.1049/mna2.12001
(Impact: 1).
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Nanoniosome-encapsulated levoflaxicin as an antibacterial agent
against Brucella. Khan S, Akhtar MU, Khan S, Javed F, Khan AA.
Journal of Basic Microbiology. 2019; 1-10.
https://doi.org/10.1002/jobm.201900454. (Impact: 1.79)
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Pre‐emptive dengue control strategy in Pakistan. Farakh Javed,
Fizzah Mansoor, Muhammad Hamza, Rasool Khan, Sobia Manzoor.
Journal of Medical Virology, 2018 (Impact: 1.9)
*
HCV non-structural NS4A protein of genotype 3a induces
mitochondria mediated death by activating Bax and the caspase
cascade. Farakh Javed, Sobia Manzoor. Microbial pathogenesis 2018
(Impact 2.3)
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Zika Virus: What we need to know? F. Javed, K Manzoor, M Ali, I
Haq, A Khan, A Zaib, S Manzoor. Journal of basic Microbiology,
2018 (Impact: 1.79)
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In-vitro transcriotion analysis of NS5A from HCV-3a circulating in
Pakistani patients with chronic hepatitis C and their differential
response to antiviral therapy. Shamim Bhatti, Sobia Manzoor, Fahed
Parvaiz, Javed Ashraf, Farakh Javed. Pakistan Journal of Medical
Sciences, 2017 (impact: 0.8)
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Molecular characterization and florescence analysis of HCV
non-structural proteins NS3, NS3-4A and NS4A of genotype 3a. F
Javed, S manzoor, A ali Khattak, M Imran, J Ashraf, F Parvaiz, H
Tariq, S Bhatti. Acta Virologica, 2015 (Impact: 1.2).
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Incidence of typhoid fever in Islamabad, Pakistan. U. ayub, A ali
Khattak, A saleem, F javed, N siddiqui, N hussain, A hayat.
American-Eurasian Journal of Toxicological Sciences. 2015 (Impact:
0.25)
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NS3-4A and NS4A proteins of hepatitis C virus regulate the
apoptotic proteins expression in Huh-7 cells. F javed, S manzoor,
A ali khattak, N Aurangzeb, A saleem, D habib, S noor khan.
International journal of Biosciences. 2015 (Impact: 0.5).
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Correlation of OAS1 Gene polymorphism at Exon 7 Splice Acceptor
Site with Interferon-Based Therapy of HCV Infection in Pakistan. M
Imran, S Manzoor, N M Khattak, M Tariq, M Khalid, F Javed, S
Bhatti. Viral Immunology, 2014 (Impact: 1.9).
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Investigation of biomarkers in peripheral blood cells of Pakistani
chronic HCV patients with genotype 3a: an assessment of
HCV-induced pathogenesis. M Khalid, S Manzoor, M Tariq, M Imran, W
Ashraf, QL Ahmed, F Javed. Future Virology, 2014 (impact 01).
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Phytoremediation potential of Aquatic herbs from steel foundry
effluent. N. Aurangzeb, S. Nisa, Y. Bibi, F Javed and F. Hussain.
Brazilian journal of chemical engineering, 2014 (Impact 01).
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Hepatitis C virus nonstructural protein 5A favors upregulation of
gluconeogenic and lipogenic gene expression leading towards
insulin resistance: a metabolic syndrome. Fahed Parvaiz, Sobia
Manzoor, Jawed Iqbal, Steven McRae, F Javed, Qazi Laeeque Ahmed,
Gulam Waris. Archives of virology 2013 (Impact: 2.03).
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An overview: In vitro models of HCV replication in different cell
cultures. Huma Tariq, Sobia Manzoor, Fahed Parvaiz, F Javed,
Kaneez Fatima and Ishtiaq Qadri. Infection, genetics and evolution
2012 (Impact: 3.039).
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Hepatitis C Virus Infection: Molecular Pathways to Insulin
resistance. Fahed Parvaiz, Sobia Manzoor, Huma Tariq, F Javed,
Kaneez Fatima and Ishtiaq Qadri. Virology journal 2012 (Impact:
2.09).
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Phylogenetic and structural analysis HCV non-structural protein 4A
from Pakistani patient. Najam us sahar sadaf zaidi, Naghmana
kanwal, Awaisa ghazal, F javed and Ishtiaq Qadri. Virus genes 2012
(Impact: 1.76).
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A molecular evaluation of Dengue virus pathogenesis & its latest
vaccine strategies.
Muhammad Faheem, Ummar Raheel, Muhammad Nasir Riaz, Naghmana Kanwal, F
Javed, Najam us Sahar Sadaf Zaidi and Ishtiaq Qadri. Molecular biology
reports 2011 (Impact: 2.506).
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Dengue fever in Indian subcontinent. Ummar Raheel, Muhammad
Faheem, Muhammad Nasir Riaz, Naghmana Kanwal, F Javed, Najam us
Sahar Sadaf Zaidi and Ishtiaq Qadri. Journal of infection in
developing countries. 2011
Gene Bank Submissions
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Javed,F., Kanwal,N., Zaidi,N.U.S., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus isolate NCVI-
35a polyprotein gene, partial cds. Accession GQ334449.
*
Javed,F., Kanwal,N., Zaidi,N.U.S., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus isolate NCVI-
N3 nonfunctional non-structural 4A protein gene, partial sequence.
Accession GQ241326.
*
Javed,F., Salman,A., Tahir,S., Zaidi,N.-U.-S.Sadaf., Raheel,U.,
Akhtar,H., Raza,A. and Qadri,I.
Hepatitis C virus subtype 3a strain Pk-N2-4 polyprotein gene, partial
cds Accession HM366723.
*
Javed,F., Salman,A., Kanwal,N., Zaidi,N.-U.-S.Sadaf.,
Afzal,S.,Faheem,M. and Qadri,I. Hepatitis C
virus subtype 3a strain Pk-N2-3 polyprotein gene, partial cds.
Accession HM366722.
*
Javed,F., Zaidi,N.U.S., Kanwal,N., Ahmad,T., Akhtar,H., Kathleen,M
and Qadri,I. Hepatitis C virus
strain G48 non-structural protein 4A (NS4A) gene, partial cds.
Accession GU174746.
*
Raza,A., Javed,F., Mahmood,K. and Qadri,I. Hepatitis B virus
isolate NCVI-3450 S protein (S)
gene, complete cds Accession: HQ641713.1 GI: 320152311
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Raza,A., Javed,F., Mahmood,K. and Qadri,I. Hepatitis B virus
isolate NCVI-2266 S protein (S) gene,
complete cds Accession: HQ641712.1 GI: 320152309
*
Raza,A., Javed,F., Mahmood,K., Riaz,S., Babar,M., Bokhari,M. and
Qadri,I. Hepatitis B virus isolate
NCVI-2184 S protein (S) gene, complete cds Accession: HQ641711.1 GI:
320152307
*
Kanwal,N., Javed,F., Zaidi,N.U.S., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus isolate NCVI-10
nonfunctional non-structural 4B protein gene, partial sequence.
Accession GQ241327.
*
Salman,A., Javed,F., Tahir,S., Ahmed,T., Zaidi,N.-U.-S.Sadaf.,
Zainab,M., Siddiqa,A. and Qadri,I.
Hepatitis C virus subtype 3a strain Pk-N2-2 polyprotein gene, partial
cds. Accession HM366721.
*
Salman,A., Javed,F., Kanwal,N., Zaidi,N.-U.-S.Sadaf., Afzal,S.,
Begum,F. and Qadri,I. Hepatitis C
virus subtype 3a strain Pk-N2-1 polyprotein gene, partial cds.
Accession HM366720.
*
Kanwal,N., Javed,F., Zaidi,N.U.S., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus subtype 3a
isolate PK1-HCV3a nonstructural protein 4A-like (NS4A) gene, partial
sequence. Accession GQ280383.
*
Kanwal,N., Javed,F., Zaidi,N.U.S., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus isolate NCVI-10
nonfunctional non-structural 4B protein gene, partial sequence.
Accession GQ241327.
*
Akhtar,H., Kanwal,N., Ghazal,A., Badshah,Y., Javed,F. and Qadri,I.
Homo sapiens IFN-lambda1
mRNA, partial cds. Accession HQ214053
*
Kanwal,N., Zaidi,N.U.S., Javed,F. and Qadri,I. Hepatitis C virus
subtype 3a isolate NCVI-ISDR/PKR-4
non-structural protein 5A (NS5A) gene, partial cds. Accession
HM446368.
*
Kanwal,N., Zaidi,N.U.S., Javed,F. and Qadri,I. Hepatitis C virus
subtype 3a isolate NCVI-ISDR/PKR-3
non-structural protein 5A (NS5A) gene, partial cds. Accession HM446367
*
Kanwal,N., Zaidi,N.U.S., Javed,F. and Qadri,I. Hepatitis C virus
subtype 3a isolate NCVI-ISDR/PKR-2
non-structural protein 5A (NS5A) gene, partial cds. Accession HM446366
*
Kanwal,N., Zaidi,N.U.S., Javed,F. and Qadri,I.Hepatitis C virus
subtype 3a isolate NCVI-ISDR/PKR-1
nonstructural protein 5A (NS5A) gene, partial cds. Accession HM446365.
*
Zaidi,N.U.S., Kanwal,N., Javed,F., Faheem,M., Raheel,U., Riaz,M.N
and Qadri,I. Hepatitis C virus
subtype 3a isolate HCV NS4A NCVI-14 nonstructural protein 4A (NS4A)
gene, partial cds. Accession
HM446364.
*
Zaidi,N.U.S., Kanwal,N., Javed,F. and Qadri,I. Hepatitis C virus
strain NCVI-N3 nonstructural 4A
protein gene, partial cds. Accession HM057604
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus isolate NCVI-10
nonfunctional non-structural protein 4B gene, complete sequence.
Accession GQ463452.
*
Kanwal,N., Zaidi,N.U.S., Ghazal,A., Javed,F. and Qadri,I.
Hepatitis C virus subtype 3a isolate G48 non-
structural 5A protein gene, partial cds. Accession GU180681.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus subtype 3a
isolate N6 nonfunctional polyprotein gene, partial sequence. Accession
GQ233034.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus subtype 3a
isolate 38 nonfunctional polyprotein gene, partial sequence. Accession
GQ233033.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ghazal,A., Fatima,K. and
Qadri,I. Hepatitis C virus subtype 3a
isolate 10 nonfunctional polyprotein gene, partial sequence. Accession
GQ233035.
*
Zaidi,N.U.S., Kanwal,N., Javed,F., Fatima,K., Ghazal,A. and
Qadri,I. Hepatitis C virus subtype 3a strain
HCV-NP3a truncated polyprotein gene, partial cds.Accession FJ48110.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ahmad,T. and Qadri,I. Hepatitis
C virus strain AB non-structural
protein 4A (NS4A) gene, partial cds. Accession GU174743.
*
Zaidi,N.U.S., Kanwal,N., Javed,F., Ahmad,T. and Qadri,I. Hepatitis
C virus strain AN non-structural
protein 4A (NS4A) gene, partial cds. Accession GU174744.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ahmad,T. and Qadri,I. Hepatitis
C virus subtype 3a isolate 43 non-
structural 4A protein gene, partial cds. Accession GU180679.
*
Kanwal,N., Zaidi,N.U.S., Javed,F., Ahmad,T. and Qadri,I. Hepatitis
C virus strain GB non-structural
protein 4A (NS4A) gene, partial cds. Accession GU17474.
References
Dr. Aleem Siddiqui
Professor
University of California, San Diego
Email: [email protected]
Phone: 858-822-1750
Dr. Sobia Manzoor
Tenured Associate Professor
Atta-ur-Rahman School of Applied Biosciences (ASAB)
National University of Sciences and Technology Islamabad
Email: [email protected]
Tel: 0092-51-90856147
Dr. Fariha Hassan
Professor
Department of Microbiology
Quaid-e Azam University Islamabad
Email: [email protected]
Tel: 0092-51-90643065
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