Table S1 Accession Number Of Sequences Downloaded From The

table s1. accession number of sequences downloaded from the hiv los alamos database. subtype nigerian gag sequences* nigerian env se

Table S1. Accession number of sequences downloaded from the HIV Los
Alamos Database.
Subtype
Nigerian gag sequences*
Nigerian env sequences*
Dated Nigerian gag sequences**
Dated Nigerian env sequences**
Reference gag sequences***
Reference env sequences***
CRF02_AG
Top of Form
AJ269982 Bottom of Form
Top of Form
DD409979
AJ269982
Top of Form
AF069933Bottom of Form
CM.AY371122
CM.AY371122
Top of Form
AJ269987 Bottom of Form
Top of Form
AF069933
AJ269987
Top of Form
AF069941
CM.AY371123
CM.AY371123
Top of Form
AJ269988 Bottom of Form
Top of Form
AF069941Bottom of Form
AJ269988
Top of Form
AJ389758 Bottom of Form
CM.AY371124
CM.AY371124
Top of Form
AJ269992 Bottom of Form
Top of Form
AJ389758Bottom of Form
AJ269992
Top of Form
AJ389759Bottom of Form
CM.AY371131
CM.AY371131
Top of Form
AJ269993 Bottom of Form
Top of Form
AJ389759 Bottom of Form
AJ269993
Top of Form
AJ389760Bottom of Form
CM.AY371137
CM.AY371137
Top of Form
AJ269997 Bottom of Form
Top of Form
AJ389760Bottom of Form
AJ269997
Top of Form
AJ389761Bottom of Form
CM.AY371132
CM.AY371132
Top of Form
AJ269998Bottom of Form
Top of Form
AJ389761 Bottom of Form
AJ269998
Top of Form
AJ389763Bottom of Form
CM.AY371134
CM.AY371134
Top of Form
AJ269999Bottom of Form
Top of Form
AJ389763 Bottom of Form
AJ269999
Top of Form
AJ389764 Bottom of Form
CM.AY371136
CM.AY371136
Top of Form
AJ270000 Bottom of Form
Top of Form
AJ389764Bottom of Form
AJ270000
Top of Form
AJ389765 Bottom of Form
CM.AY371138
CM.AY371138
Top of Form
AJ270002 Bottom of Form
Top of Form
AJ389765 Bottom of Form
AJ270002
Top of Form
AJ389766Bottom of Form
CM.AY371142
CM.AY371142
Top of Form
AJ270010 Bottom of Form
Top of Form
AJ389766Bottom of Form
AJ270010
Top of Form
AJ389767Bottom of Form
CM.AY371125
CM.AY371125
Top of Form
AJ270014 Bottom of Form
Top of Form
AJ389767Bottom of Form
AJ270014
Top of Form
AJ389768 Bottom of Form
CM.AY371126
CM.AY371126
Top of Form
DD409979 Bottom of Form
Top of Form
AJ389768Bottom of Form
DQ168577
Top of Form
AJ389770 Bottom of Form
CM.AY371127
CM.AY371127
Top of Form
DQ168577Bottom of Form
Top of Form
AJ389770 Bottom of Form
DQ168578
Top of Form
AJ389771Bottom of Form
CM.AY371139
CM.AY371139
Top of Form
L39106 Bottom of Form
Top of Form
AJ389771 Bottom of Form
Top of Form
L39106 Bottom of Form
Top of Form
AJ389777Bottom of Form
CM.AY371140
CM.AY371140
Top of Form
AJ389777Bottom of Form
Top of Form
DQ168577Bottom of Form
CM.AY371146
CM.AY371146
Top of Form
DQ168577Bottom of Form
DQ168578
CM.AY371128
CM.AY371128
DQ168578
Top of Form
L39106Bottom of Form
CM.AY371129
CM.AY371129
Top of Form
L39106 Bottom of Form
Top of Form
U48628 Bottom of Form
CM.AY371130
CM.AY371130
Top of Form
U48628 Bottom of Form
CM.AY371141
CM.AY371141
CM.AJ286133
CM.AJ286133
CM.AF377954
CM.AF377954
CM.AF377955
CM.AF377955
CM.AY271690
CM.AY271690
EC.AY151001
EC.AY151001
ES.EU786671
ES.EU786671
ES.EU884501
ES.EU884501
FR.AF063223
FR.AF063223
GH.AB286855
GH.AB286855
GH.AB286857
GH.AB286857
GH.AB286862
GH.AB286862
GH.AB286863
GH.AB286863
GH.AB231895
GH.AB231895
GH.AB231896
GH.AB231896
GH.AB231898
GH.AB231898
GH.AB049811
GH.AB049811
SE.AF107770
SE.AF107770
SN.AJ251056
SN.AJ251056
SN.AJ251057
SN.AJ251057
US.AY444811
US.AY444811
US.AY444809
US.AY444809
UZ.AY829214
UZ.AY829214
Subtype G
Top of Form
AJ269980Bottom of Form
Top of Form
AF069935Bottom of Form
Top of Form
AJ269980 Bottom of Form
Top of Form
AF069935Bottom of Form
BE.AF084936
BE.AF084936
Top of Form
AJ269995Bottom of Form
Top of Form
AF069937 Bottom of Form
Top of Form
AJ269995 Bottom of Form
Top of Form
AF069937 Bottom of Form
CM.AY371121
CM.AY371121
Top of Form
AJ269996Bottom of Form
Top of Form
AF069943Bottom of Form
Top of Form
AJ269996Bottom of Form
Top of Form
AF069943Bottom of Form
CM.AY772535
CM.AY772535
Top of Form
AJ270003 Bottom of Form
Top of Form
AF069947Bottom of Form
Top of Form
AJ270003Bottom of Form
Top of Form
AF069947Bottom of Form
CU.AY586547
CU.AY586547
Top of Form
AJ270011 Bottom of Form
Top of Form
AJ389723Bottom of Form
Top of Form
AJ270011 Bottom of Form
Top of Form
AJ389723Bottom of Form
CU.AY586548
CU.AY586548
Top of Form
AJ270012Bottom of Form
Top of Form
AJ389724Bottom of Form
Top of Form
AJ270012 Bottom of Form
Top of Form
AJ389724 Bottom of Form
CU.AY586549
CU.AY586549
Top of Form
DQ168573 Bottom of Form
Top of Form
AJ389725Bottom of Form
Top of Form
DQ168573Bottom of Form
Top of Form
AJ389725 Bottom of Form
ES.EU786670
ES.EU786670
Top of Form
DQ168575Bottom of Form
Top of Form
AJ389726Bottom of Form
Top of Form
DQ168575 Bottom of Form
Top of Form
AJ389726 Bottom of Form
ES.AF450098
ES.AF450098
Top of Form
DQ168576Bottom of Form
Top of Form
AJ389727 Bottom of Form
Top of Form
DQ168576 Bottom of Form
Top of Form
AJ389727 Bottom of Form
GH.AB287004
GH.AB287004
Top of Form
DQ168579 Bottom of Form
Top of Form
AJ389728 Bottom of Form
Top of Form
DQ168579Bottom of Form
Top of Form
AJ389728Bottom of Form
KE.AF061641
KE.AF061641
Top of Form
U88826 Bottom of Form
Top of Form
AJ389729Bottom of Form
Top of Form
U88826 Bottom of Form
Top of Form
AJ389729 Bottom of Form
PT.AY612637
PT.AY612637
Top of Form
AJ389730Bottom of Form
Top of Form
AJ389730 Bottom of Form
SE.AF061642
SE.AF061642
Top of Form
AJ389731Bottom of Form
Top of Form
AJ389731 Bottom of Form
AJ389732
AJ389732
AJ389733
AJ389733
AJ389734
AJ389734
AJ389735
AJ389735
AJ389737
AJ389737
AJ389738
AJ389738
Top of Form
AJ389740Bottom of Form
Top of Form
AJ389740 Bottom of Form
Top of Form
AJ389742 Bottom of Form
Top of Form
AJ389742 Bottom of Form
Top of Form
AJ389743 Bottom of Form
Top of Form
AJ389743 Bottom of Form
AJ389744
AJ389744
AJ389745
AJ389745
AJ389746
AJ389746
AJ389747
AJ389747
AJ389748
AJ389748
AJ389749
AJ389749
AJ389750
AJ389750
AJ389751
AJ389751
AJ389752
AJ389752
AJ389753
AJ389753
AJ389754
AJ389754
AJ389755
AJ389755
AJ389756
AJ389756
AJ389757
AJ389757
Top of Form
DQ168573 Bottom of Form
Top of Form
DQ168573Bottom of Form
Top of Form
DQ168575Bottom of Form
Top of Form
DQ168575Bottom of Form
Top of Form
DQ168576Bottom of Form
Top of Form
DQ168576Bottom of Form
Top of Form
DQ168579Bottom of Form
Top of Form
DQ168579Bottom of Form
Top of Form
U88826 Bottom of Form
Top of Form
U88826 Bottom of Form
Others
Top of Form
AF212292Bottom of Form
Top of Form
AF069934 Bottom of Form
Top of Form
AJ245483 Bottom of Form
Top of Form
AJ245484Bottom of Form
Top of Form
AJ270004Bottom of Form
Top of Form
AJ389741Bottom of Form
Top of Form
AJ270013 Bottom of Form
Top of Form
AJ389755Bottom of Form
Top of Form
AJ269979Bottom of Form
Top of Form
AJ389762Bottom of Form
Top of Form
AJ269981 Bottom of Form
Top of Form
AJ389773 Bottom of Form
Top of Form
AJ269983 Bottom of Form
Top of Form
AJ389774 Bottom of Form
Top of Form
AJ269984 Bottom of Form
Top of Form
AJ389776 Bottom of Form
Top of Form
AJ269986Bottom of Form
Top of Form
AJ389778 Bottom of Form
Top of Form
AJ269989 Bottom of Form
Top of Form
AJ389779Bottom of Form
Top of Form
AJ269990 Bottom of Form
Top of Form
AF069932Bottom of Form
Top of Form
AJ270005 Bottom of Form
Top of Form
AF069939Bottom of Form
Top of Form
AJ270006 Bottom of Form
Top of Form
FJ977087Bottom of Form
Top of Form
AJ270007 Bottom of Form
Top of Form
FJ977092 Bottom of Form
Top of Form
AJ270008Bottom of Form
Top of Form
FJ977093Bottom of Form
Top of Form
AJ270009 Bottom of Form
Top of Form
FJ977095Bottom of Form
Top of Form
AJ270015 Bottom of Form
Top of Form
AF069945Bottom of Form
Top of Form
DQ168574Bottom of Form
Top of Form
AJ389780 Bottom of Form
Top of Form
AJ269985Bottom of Form
Top of Form
AJ389781 Bottom of Form
Top of Form
AJ269991 Bottom of Form
Top of Form
AJ389775Bottom of Form
Top of Form
AJ269994 Bottom of Form
Top of Form
U88825 Bottom of Form
Top of Form
U88825 Bottom of Form
Top of Form
AJ270001 Bottom of Form
* All the available Nigerian sequences (corresponding to the
coordinates of our sequences) downloaded from the HIV Los Alamos data
base to determine the relationship (figure 2) of study isolates to
previous Nigerian HIV-1 isolates.
** All the available dated Nigerian sequences (corresponding to the
coordinates of our sequences) downloaded from the HIV Los Alamos data
base to determine the relationship (figure 4) between Nigerian
isolates and reference sequences from other parts of the World.
*** The reference sequences (figure 4) from other countries downloaded
from the HIV Los Alamos data base. The accession numbers are preceded
by two letter code of the sampling country - BE: Belgium; CM:
Cameroon; EC: Ecuador; ES: Spain; FR: France; GH: Ghana; KE: Kenya;
PT: Portugal; SE: Sweden; SN: Senegal; US: United States; UZ:
Uzbekistan.
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